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1

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) || RNA Editing in Neurological and Neurodegenerative Disorders

Picardi, Ernesto, Pesole, Graziano

Année:

2021

Fichier:

PDF, 386 KB

2021

2

The guinea-pig is not a rodent

D'Erchia, Anna Maria, Gissi, Carmela, Pesole, Graziano, Saccone, Cecilia, Arnason, Ulfur

Journal:

Année:

1996

Fichier:

PDF, 908 KB

1996

3

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) ||

Picardi, Ernesto, Pesole, Graziano

Année:

2021

Fichier:

PDF, 9.06 MB

2021

4

Laniakea: an open solution to provide Galaxy âon-demandâ instances over heterogeneous cloud infrastructures

Tangaro, Marco Antonio, Donvito, Giacinto, Antonacci, Marica, Chiara, Matteo, Mandreoli, Pietro, Pesole, Graziano, Zambelli, Federico

Journal:

Année:

2020

Fichier:

PDF, 3.61 MB

2020

5

Nucleotide Substitution Rate of Mammalian Mitochondrial Genomes

Graziano Pesole, Carmela Gissi, Anna De Chirico, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Année:

1999

Langue:

english

Fichier:

PDF, 322 KB

english, 1999

6

Linguistic approaches to the analysis of sequence information

Graziano Pesole, Marcella Attimonelli, Cecilia Saccone

Journal:

Trends in Biotechnology

Année:

1994

Langue:

english

Fichier:

PDF, 728 KB

english, 1994

7

Mitogenomics reveals two cryptic species in Ciona intestinalis

Fabio Iannelli, Graziano Pesole, Paolo Sordino, Carmela Gissi

Journal:

Trends in Genetics

Année:

2007

Langue:

english

Fichier:

PDF, 342 KB

english, 2007

8

Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodentAnomalurus

David S Horner, Konstantinos Lefkimmiatis, Aurelio Reyes, Carmela Gissi, Cecilia Saccone, Graziano Pesole

Journal:

BMC Evolutionary Biology

Année:

2007

Langue:

english

Fichier:

PDF, 342 KB

english, 2007

9

What is a gene? An updated operational definition

Graziano Pesole

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 598 KB

english, 2008

10

Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs

Graziano Pesole, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 605 KB

english, 2000

11

Evolution of the mitochondrial genetic system: an overview

Cecilia Saccone, Carmela Gissi, Cecilia Lanave, Alessandra Larizza, Graziano Pesole, Aurelio Reyes

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 286 KB

english, 2000

12

Changes in Escherichia coli transcriptome during acclimatization at low temperature

Alessandra Polissi, Walter De Laurentis, Sandro Zangrossi, Federica Briani, Vera Longhi, Graziano Pesole, Gianni Dehò

Journal:

Research in Microbiology

Année:

2003

Langue:

english

Fichier:

PDF, 261 KB

english, 2003

13

Handbook of Comparative Genomics (Principles and Methodology) || Molecular Evolution

Saccone, Cecilia, Pesole, Graziano

Année:

2003

Langue:

english

Fichier:

PDF, 2.96 MB

english, 2003

14

VDR primary targets by genome-wide transcriptional profiling

Goeman, Frauke, De Nicola, Francesca, D’Onorio De Meo, Paolo, Pallocca, Matteo, Elmi, Berardino, Castrignanò, Tiziana, Pesole, Graziano, Strano, Sabrina, Blandino, Giovanni, Fanciulli, Maurizio, Muti,

Journal:

The Journal of Steroid Biochemistry and Molecular Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2014

15

Genome sequencing of multiple isolates highlights sub-telomeric genomic diversity within Fusarium fujikuroi

Chiara, Matteo, Fanelli, Francesca, Mulè, Giuseppina, Logrieco, Antonio F., Pesole, Graziano, Leslie, John F., Horner, David S, Toomajian, Christopher

Journal:

Genome Biology and Evolution

Année:

2015

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2015

16

Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)

Kissling, W. Daniel, Hardisty, Alex, García, Enrique Alonso, Santamaria, Monica, De Leo, Francesca, Pesole, Graziano, Freyhof, Jörg, Manset, David, Wissel, Silvia, Konijn, Jacco, Los, Wouter

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 742 KB

english, 2015

17

Elucidating the editome: bioinformatics approaches for RNA editing detection

Diroma, Maria Angela, Ciaccia, Loredana, Pesole, Graziano, Picardi, Ernesto

Journal:

Briefings in Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 514 KB

english, 2017

18

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences

Santamaria, Monica, Fosso, Bruno, Licciulli, Flavio, Balech, Bachir, Larini, Ilaria, Grillo, Giorgio, De Caro, Giorgio, Liuni, Sabino, Pesole, Graziano

Journal:

Nucleic Acids Research

Année:

2017

Langue:

english

Fichier:

PDF, 989 KB

english, 2017

19

Investigating RNA editing in deep transcriptome datasets with REDItools and REDIportal

Lo Giudice, Claudio, Tangaro, Marco Antonio, Pesole, Graziano, Picardi, Ernesto

Journal:

Nature Protocols

Année:

2020

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2020

20

[Methods in Molecular Biology] RNA Editing Volume 2181 (Methods and Protocols) || High-Throughput Sequencing to Detect DNA-RNA Changes

Picardi, Ernesto, Pesole, Graziano

Année:

2021

Fichier:

PDF, 309 KB

2021

21

The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health

Stabili, Loredana, Rizzo, Lucia, Basso, Lorena, Marzano, Marinella, Fosso, Bruno, Pesole, Graziano, Piraino, Stefano

Journal:

Année:

2020

Fichier:

PDF, 1.84 MB

2020

22

A high performance grid-web service framework for the identification of ‘conserved sequence tags’

Paolo D’Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole

Journal:

Future Generation Computer Systems

Année:

2007

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2007

23

Evolutionary dynamics of mammalian mRNA untranslated regions by comparative analysis of orthologous human, artiodactyl and rodent gene pairs

Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone

Journal:

Computers & Chemistry

Année:

2002

Langue:

english

Fichier:

PDF, 111 KB

english, 2002

24

Databases of mRNA untranslated regions for metazoa

Graziano Pesole, Giorgio Grillo, Sabino Liuni

Journal:

Computers & Chemistry

Année:

1996

Langue:

english

Fichier:

PDF, 319 KB

english, 1996

25

A tandemly repeated DNA family originated from SINE-related elements in the European plethodontid salamanders (Amphibia, Urodela)

Renata Batistoni, Graziano Pesole, Silvia Marracci, Irma Nardi

Journal:

Journal of Molecular Evolution

Année:

1995

Langue:

english

Fichier:

PDF, 1.08 MB

english, 1995

26

The reversible stationary markov process for estimating the pattern of nucleotide substitution: A response to Ziheng Yang

Cecilia Saccone, Cecilia Lanave, Graziano Pesole, Giuliano Preparata

Journal:

Journal of Molecular Evolution

Année:

1995

Langue:

english

Fichier:

PDF, 70 KB

english, 1995

27

The importance of base composition in the correct assessment of genetic distance

Graziano Pesole, Grazia Dellisanti, Giuliano Preparata, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Année:

1995

Langue:

english

Fichier:

PDF, 328 KB

english, 1995

28

The main regulatory region of mammalian mitochondrial DNA: Structure-function model and evolutionary pattern

Cecilia Saccone, Graziano Pesole, Elisabetta Sbisá

Journal:

Journal of Molecular Evolution

Année:

1991

Langue:

english

Fichier:

PDF, 841 KB

english, 1991

29

Gypsy/Ty3-like elements in the genome of the terrestrial salamanderHydromantes(Amphibia, Urodela)

Silvia Marracci, Renata Batistoni, Graziano Pesole, Lorenzo Citti, Irma Nardi

Journal:

Journal of Molecular Evolution

Année:

1996

Langue:

english

Fichier:

PDF, 1.23 MB

english, 1996

30

Evolution of thenad3-rps12gene cluster in angiosperm mitochondria: Comparison of edited and unedited sequences

Graziano Pesole, Luigi R. Ceci, Carmela Gissi, Cecilia Saccone, Carla Quagliariello

Journal:

Journal of Molecular Evolution

Année:

1996

Langue:

english

Fichier:

PDF, 578 KB

english, 1996

31

The evolution of the RNase P- and RNase MRP-associated RNAs: Phylogenetic analysis and nucleotide substitution rate

Elisabetta Sbisà, Graziano Pesole, Apollonia Tullo, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Année:

1996

Langue:

english

Fichier:

PDF, 1.08 MB

english, 1996

32

An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences

Giulio Pavesi, Giancarlo Mauri, Graziano Pesole

Journal:

Journal of Computer Science and Technology

Année:

2004

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2004

33

Evolution of thenad3-rps12Gene Cluster in Angiosperm Mitochondria: Comparison of Edited and Unedited Sequences

Graziano Pesole, Luigi R. Ceci, Carmela Gissi, Cecilia Saccone, Carla Quagliariello

Journal:

Journal of Molecular Evolution

Année:

1996

Langue:

english

Fichier:

PDF, 110 KB

english, 1996

34

Inclusion of Cetaceans Within the Order Artiodactyla Based on Phylogenetic Analysis of Pancreatic Ribonuclease Genes

Reinhard G. Kleineidam, Graziano Pesole, Heleen J. Breukelman, Jaap J. Beintema, Ron. A. Kastelein

Journal:

Journal of Molecular Evolution

Année:

1999

Langue:

english

Fichier:

PDF, 697 KB

english, 1999

35

Apolipoprotein(a): A Puzzling Evolutionary Story

Richard Lawn, Lazlo Patthy, Graziano Pesole, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Année:

1997

Langue:

english

Fichier:

PDF, 96 KB

english, 1997

36

Lineage Specificity of the Evolutionary Dynamics of the mtDNA D-Loop Region in Rodents

Alessandra Larizza, Graziano Pesole, Aurelio Reyes, Elisabetta Sbisà, Cecilia Saccone

Journal:

Journal of Molecular Evolution

Année:

2002

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2002

37

Molecular Clock and Gene Function

Cecilia Saccone, Corrado Caggese, Anna Maria D’Erchia, Cecilia Lanave, Marta Oliva, Graziano Pesole

Journal:

Journal of Molecular Evolution

Année:

2003

Langue:

english

Fichier:

PDF, 151 KB

english, 2003

38

Complete mtDNA ofCiona intestinalisReveals Extensive Gene Rearrangement and the Presence of anatp8and an ExtratrnMGene in Ascidians

Carmela Gissi, Fabio Iannelli, Graziano Pesole

Journal:

Journal of Molecular Evolution

Année:

2004

Langue:

english

Fichier:

PDF, 420 KB

english, 2004

39

A Novel Additional Group II Intron Distinguishes the Mitochondrialrps3Gene in Gymnosperms

Teresa M.R. Regina, Ernesto Picardi, Loredana Lopez, Graziano Pesole, Carla Quagliariello

Journal:

Journal of Molecular Evolution

Année:

2005

Langue:

english

Fichier:

PDF, 237 KB

english, 2005

40

Identification, molecular characterization, and tissue expression of OVCOV1

Richard E. Leach, Zofia M. Duniec-Dmuchowski, Graziano Pesole, Tetsuya S. Tanaka, Minoru S.H. Ko, Randall D. Armant, Stephen A. Krawetz

Journal:

Mammalian Genome

Année:

2002

Langue:

english

Fichier:

PDF, 183 KB

english, 2002

41

The Members of theRHGene Family (RH50andRH30) Followed Different Evolutionary Pathways

Matassi, Giorgio, Chérif-Zahar, Baya, Pesole, Graziano, Raynal, Virginie, Cartron, Jean-Pierre

Journal:

Journal of Molecular Evolution

Année:

1999

Langue:

english

Fichier:

PDF, 780 KB

english, 1999

42

Selection of relevant genes in cancer diagnosis based on their prediction accuracy

Rosalia Maglietta, Annarita D’Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona

Journal:

Artificial Intelligence in Medicine

Année:

2007

Langue:

english

Fichier:

PDF, 215 KB

english, 2007

43

Expression and genomic analyses of Camelus dromedarius T cell receptor delta (TRD) genes reveal a variable domain repertoire enlargement due to CDR3 diversification and somatic mutation

Rachele Antonacci, Micaela Mineccia, Marie-Paule Lefranc, Hassan M.E. Ashmaoui, Cecilia Lanave, Barbara Piccinni, Graziano Pesole, Mohamed S. Hassanane, Serafina Massari, Salvatrice Ciccarese

Journal:

Molecular Immunology

Année:

2011

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2011

44

Energy biogenesis: one key for coordinating two genomes

Marco Sardiello, Gaetano Tripoli, Antonio Romito, Crescenzio Minervini, Luigi Viggiano, Corrado Caggese, Graziano Pesole

Journal:

Trends in Genetics

Année:

2005

Langue:

english

Fichier:

PDF, 134 KB

english, 2005

45

Global immune disregulation in multiple sclerosis: from the adaptive response to the innate immunity

Giovanni Ristori, Chiara Montesperelli, Alessia Perna, Stefania Cannoni, Luca Battistini, Giovanna Borsellino, Paolo Riccio, Graziano Pesole, Alberto Chersi, Carlo Pozzilli, Carla Buttinelli, Marco Sa

Journal:

Journal of Neuroimmunology

Année:

2000

Langue:

english

Fichier:

PDF, 45 KB

english, 2000

46

Erratum to “Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin”: [Mol Biochem Parasitol 2002; 124: 91–94]

Carla De Giorgi, Pasqua Veronico, Francesca De Luca, Angela Natilla, Cecilia Lanave, Graziano Pesole

Journal:

Molecular and Biochemical Parasitology

Année:

2003

Langue:

english

Fichier:

PDF, 26 KB

english, 2003

47

Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin

Carla De Giorgi, Pasqua Veronico, Francesca De Luca, Angela Natilla, Cecilia Lanave, Graziano Pesole

Journal:

Molecular and Biochemical Parasitology

Année:

2002

Langue:

english

Fichier:

PDF, 194 KB

english, 2002

48

Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNAs

Graziano Pesole, Sabino Liuni

Journal:

Trends in Genetics

Année:

1999

Langue:

english

Fichier:

PDF, 58 KB

english, 1999

49

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics

Matteo Rè, Graziano Pesole, David S Horner

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 613 KB

english, 2009

50

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements

Teresa M Creanza, David S Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2009